DNA Binding Motif

						

			
Accessions: UP00465A_1 (UniPROBE 20160601), UP00465A_2 (UniPROBE 20160601)

			
Names: Sin Three Binding protein, Stb4
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: mwbwwwttATCCGArvtyyyam
Weblogo: 
PSSM: P0      A      C      G      T
01   0.42   0.34   0.13   0.11      m
02   0.39   0.12   0.15   0.33      w
03   0.10   0.29   0.32   0.30      b
04   0.27   0.19   0.17   0.37      w
05   0.32   0.14   0.16   0.37      w
06   0.56   0.03   0.07   0.34      w
07   0.23   0.09   0.23   0.45      t
08   0.01   0.10   0.22   0.68      t
09   0.87   0.01      0   0.12      A
10   0.01   0.11   0.03   0.86      T
11      0   0.99      0      0      C
12      0   0.93   0.07      0      C
13      0      0   0.99      0      G
14   0.94   0.01   0.04      0      A
15   0.58   0.03   0.36   0.03      r
16   0.28   0.27   0.28   0.17      v
17   0.13   0.21   0.18   0.48      t
18   0.16   0.41   0.16   0.26      y
19   0.17   0.33   0.20   0.31      y
20   0.17   0.28   0.18   0.37      y
21   0.33   0.23   0.20   0.25      a
22   0.31   0.31   0.21   0.18      m
Binding TFs: UP00465A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
Binding Sites: ATATCCGA
CCTCGGAA
CTCGGAAA
CTCGGAAC
CTTCGGAA
GCTCGGAA
ACATCCGA
ATCCGAAA
ATCCGAAG
ATCCGAAT
ATCCGAGG
CATCCGAG
CTCGGAAG
CTCGGATA
CTCGGATC
CTTCCGAA
GATCCGAA
GTATCCGA
TATCCGAA
TCGGATAA
			
Publications: Gordân R, Murphy KF, McCord RP, Zhu C, Vedenko A, Bulyk ML. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol : (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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