DNA Binding Motif

						

			
Accessions: 4u0y_ABCD (3D-footprint 20231221)

			
Names: HTH-type transcriptional repressor YvoA
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the DNA-binding domains of YvoA in complex with palindromic operator DNA
Length: 14
Consensus: GTGGycTAgaCCAC
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02      0      0      0     96      T
03      0      0     96      0      G
04      0      0     96      0      G
05      5     34      2     55      y
06     14     60      8     14      c
07      0      0      0     96      T
08     96      0      0      0      A
09     19     17     52      8      g
10     58     14     16      8      a
11      0     96      0      0      C
12      0     96      0      0      C
13     96      0      0      0      A
14      6     90      0      0      C
Type: Heterodimer
Binding TFs: 4u0y_A / 4u0y_B / 4u0y_C (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain)
4u0y_D (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain)
Binding Sites: 4u0y_E / 4u0y_F
			
Publications: Fillenberg S.B, Grau F.C, Seidel G, Muller Y.A. Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR. Nucleic acids research 43:1283-96 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.