DNA Binding Motif

Accessions: 1a0a_B (3D-footprint 20231221)
Names: PROTEIN (PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4)
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX
Length: 5
Consensus: cgTGG
Weblogo:
PSSM: P0 A C G T
01 13 54 13 16 c
02 13 13 57 13 g
03 0 0 0 96 T
04 0 0 96 0 G
05 0 0 96 0 G
Binding TFs: 1a0a_B (Helix-loop-helix DNA-binding domain)
Binding Sites: 1a0a_C
1a0a_D
Publications: Shimizu T, Toumoto A, Ihara K, Shimizu M, Kyogoku Y, Ogawa N, Oshima Y, Hakoshima T. Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition. The EMBO journal 16:4689-97 (1997). [Pubmed]

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