DNA Binding Motif
| Accessions: | UP00302A_1 (UniPROBE 20160601) |
| Names: | LPI12C, Putative transcriptional regulatory protein YPL133C, Rds2 |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 21 |
| Consensus: | rkdkhgaAAwyCCGAgrrmkt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.38 0.17 0.33 0.12 r 02 0.17 0.19 0.28 0.36 k 03 0.27 0.19 0.25 0.29 d 04 0.21 0.23 0.25 0.30 k 05 0.28 0.30 0.16 0.25 h 06 0.21 0.14 0.49 0.16 g 07 0.67 0.06 0.14 0.13 a 08 0.77 0.03 0.10 0.10 A 09 0.80 0.06 0.03 0.10 A 10 0.57 0.08 0.05 0.30 w 11 0 0.60 0.01 0.38 y 12 0 0.98 0.02 0 C 13 0 0.96 0.03 0 C 14 0 0 0.99 0 G 15 0.95 0.02 0.01 0.02 A 16 0.19 0.19 0.38 0.23 g 17 0.30 0.17 0.36 0.16 r 18 0.29 0.20 0.30 0.21 r 19 0.32 0.27 0.17 0.24 m 20 0.18 0.20 0.31 0.30 k 21 0.16 0.20 0.17 0.46 t |
| Binding TFs: | UP00302A |
| Binding Sites: | AAACCCGA AACCCGAG AACTCCGA AAGTCCGA AATCCCGA ACATCGGA ACATCGGG ACTCCGAA ACTCCGAG ATCGGGGG ATTCCCGA ATTTCCGA CCCCGAAG CCCCGACG CCCCGAGG GCTCGGGA TCCCGAGA TCGGAGAA CCCCGAGA GGTCCCGA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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