DNA Binding Motif

						

			
Accessions: MA0586.2 (JASPAR 2024), M0738 (AthalianaCistrome v4_May2016)

			
Names: SPL14, SPL14.DAP, T00376;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 11
Consensus: tCCGTACaaww
Weblogo: 
PSSM: P0      A      C      G      T
01    125      7     74    377      t
02     23    534      0     26      C
03      0    583      0      0      C
04      0      0    583      0      G
05      0      0      0    583      T
06    583      0      0      0      A
07      0    581      0      2      C
08    302     87    129     65      a
09    239    105    113    126      a
10    164    104     83    232      w
11    148     86    104    245      w
Type: Heterodimer
Binding TFs: Q8RY95 / T00376 (SBP domain)
Q8RY95
Binding Sites: MA0586.2.1
MA0586.2.10
MA0586.2.11
MA0586.2.12
MA0586.2.13
MA0586.2.14
MA0586.2.15
MA0586.2.16
MA0586.2.17
MA0586.2.18
MA0586.2.19
MA0586.2.2
MA0586.2.20
MA0586.2.3
MA0586.2.4
MA0586.2.5
MA0586.2.6
MA0586.2.7
MA0586.2.8
MA0586.2.9
			
Publications: Liang X., Nazarenus T. J., Stone J. M. Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance.. Biochemistry 47:3645-3653 (2008). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.