DNA Binding Motif

						

			
Accessions: UN0209.1 (JASPAR 2024), MA1713.1 (JASPAR 2024)

			
Names: ZNF610
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 14
Consensus: sscGCCGCTCCsss
Weblogo: 
PSSM: P0      A      C      G      T
01    355    960    785    286      s
02    176   1222    738    250      s
03    354   1347    392    293      c
04     68    121   2118     79      G
05     37   2245     84     20      C
06     18   2312     41     15      C
07     18     45   2312     11      G
08      4   2357     21      4      C
09     18     34     45   2289      T
10      6   2315     62      3      C
11    123   1976    186    101      C
12    135    966    847    438      s
13    266   1117    657    346      s
14    465    949    663    309      s
Type: Heterodimer
Binding TFs: Q8N9Z0 (Zinc finger, C2H2 type, KRAB box, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Q8N9Z0
Binding Sites: MA1713.1.1 / UN0209.1.1
MA1713.1.10 / UN0209.1.10
MA1713.1.11 / UN0209.1.11
MA1713.1.12 / UN0209.1.12
MA1713.1.13 / UN0209.1.13
MA1713.1.14 / UN0209.1.14
MA1713.1.15 / UN0209.1.15
MA1713.1.16 / UN0209.1.16
MA1713.1.17 / UN0209.1.17
MA1713.1.18 / UN0209.1.18
MA1713.1.19 / UN0209.1.19
UN0209.1.2
MA1713.1.20 / UN0209.1.20
MA1713.1.3 / UN0209.1.3
MA1713.1.4 / MA1713.1.7 / UN0209.1.4 / UN0209.1.7
MA1713.1.5 / MA1713.1.6 / MA1713.1.8 / UN0209.1.5 / UN0209.1.6 / UN0209.1.8
MA1713.1.9 / UN0209.1.9
MA1713.1.2
			
Publications: Imbeault M, Helleboid PY, Trono D. KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks. Nature 543:550-554 (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.