DNA Binding Motif

						

			
Accessions: MA0345.1 (JASPAR 2024)

			
Names: NHP6A
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 21
Consensus: mtkwhywmTATATAawwwwrh
Weblogo: 
PSSM: P0      A      C      G      T
01    306    279    214    200      m
02    242    217     83    456      t
03    236    153    311    298      k
04    380    212    151    255      w
05    285    333     99    281      h
06    104    516     49    329      y
07    339    130     71    458      w
08    491    250     64    193      m
09    114     24      6    855      T
10    903     10     26     58      A
11    126     29      8    835      T
12    847     16     43     92      A
13     57     42     28    871      T
14    746     16     20    216      A
15    650     30    153    166      a
16    377    136    137    348      w
17    375    138    138    346      w
18    416    111    172    299      w
19    286    154    124    434      w
20    313    147    314    224      r
21    329    289     96    284      h
Binding TFs: P11632 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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