DNA Binding Motif

						

			
Accessions: 5gnj_AB (3D-footprint 20231221)

			
Names: Transcription factor MYC2
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of a transcription factor and DNA complex
Length: 8
Consensus: taCACGTG
Weblogo: 
PSSM: P0      A      C      G      T
01     12     12     12     60      t
02     60     12     12     12      a
03      0     96      0      0      C
04     96      0      0      0      A
05     12     84      0      0      C
06      0      0     96      0      G
07      0      0      0     96      T
08      0      0     96      0      G
Type: Heterodimer
Binding TFs: 5gnj_A (Helix-loop-helix DNA-binding domain)
5gnj_B (Helix-loop-helix DNA-binding domain)
Binding Sites: 5gnj_C
5gnj_D
			
Publications: Lian TF, Xu YP, Li LF, Su XD. Crystal Structure of Tetrameric Arabidopsis MYC2 Reveals the Mechanism of Enhanced Interaction with DNA. Cell Rep 19:1334-1342 (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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