DNA Binding Motif

						

			
Accessions: MA1647.1 (JASPAR 2024)

			
Names: PRDM4
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: rdCTGTTTCwa
Weblogo: 
PSSM: P0      A      C      G      T
01   1980   1163   2553   1559      r
02   2041   1012   2079   2123      d
03    281   6504    316    154      C
04    860    286    566   5543      T
05    293    110   6813     39      G
06    147    137     82   6889      T
07    169    405    393   6288      T
08    195    138    111   6811      T
09    481   6353    129    292      C
10   2111   1456    726   2962      w
11   2580   1532   1344   1799      a
Type: Heterodimer
Binding TFs: Q9UKN5 (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Q9UKN5
Binding Sites: MA1647.1.5
MA1647.1.1 / MA1647.1.3
MA1647.1.10
MA1647.1.11
MA1647.1.12
MA1647.1.13
MA1647.1.14
MA1647.1.15
MA1647.1.16
MA1647.1.17
MA1647.1.18
MA1647.1.19
MA1647.1.2
MA1647.1.20
MA1647.1.4
MA1647.1.6
MA1647.1.7
MA1647.1.8
MA1647.1.9
			
Publications: Bogani D, Morgan MA, Nelson AC, Costello I, McGouran JF, Kessler BM, Robertson EJ, Bikoff EK. The PR/SET domain zinc finger protein Prdm4 regulates gene expression in embryonic stem cells but plays a nonessential role in the developing mouse embryo. Mol Cell Biol 33:3936-50 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.