DNA Binding Motif
| Accessions: | MA2420.1 (JASPAR 2024) |
| Names: | SBP6 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 8 |
| Consensus: | AAGTACAA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 11102 376 1080 607 A 02 11189 290 1425 261 A 03 127 62 12390 586 G 04 121 55 479 12510 T 05 12984 51 66 64 A 06 132 12922 42 69 C 07 12012 339 330 484 A 08 10537 891 490 1247 A |
| Binding TFs: | Q9SM14 |
| Binding Sites: | MA2420.1.13 MA2420.1.17 / MA2420.1.20 MA2420.1.1 / MA2420.1.9 MA2420.1.10 / MA2420.1.15 / MA2420.1.16 / MA2420.1.19 / MA2420.1.4 / MA2420.1.5 / MA2420.1.7 / MA2420.1.8 MA2420.1.11 / MA2420.1.12 MA2420.1.14 MA2420.1.18 MA2420.1.2 MA2420.1.3 / MA2420.1.6 |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.