DNA Binding Motif

						

			
Accessions: MA1861.1 (JASPAR 2024)

			
Names: FoxB
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 22
Consensus: hmwwawgYAAATATTkrywtwd
Weblogo: 
PSSM: P0      A      C      G      T
01    267    253    228    252      h
02    300    252    234    215      m
03    278    235    156    332      w
04    365    107     53    474      w
05    500    114    233    153      a
06    373    109    138    380      w
07    249     66    557    127      g
08     23    257     11    708      Y
09    737    193     14     57      A
10    904     49     12     35      A
11    931     17     15     36      A
12      8     93      9    891      T
13    950      8     31     11      A
14     84     34     42    840      T
15     66     35     50    849      T
16    127     72    273    528      k
17    516     70    311    103      r
18    146    488    104    262      y
19    354    154    123    370      w
20    219    212    135    433      t
21    418     70    123    389      w
22    334    127    252    287      d
Type: Heterodimer
Binding TFs: Q4H3J4 (Fork head domain)
Q4H3J4
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.