DNA Binding Motif
| Accessions: | MA0062.4 (JASPAR 2024) |
| Names: | GABPA |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 10 |
| Consensus: | cACTTCCTGt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 7639 41398 6989 9453 c 02 52260 3988 4873 4358 A 03 929 55664 2169 6717 C 04 3885 1443 965 59186 T 05 862 1230 1633 61754 T 06 1398 61373 1150 1558 C 07 993 63107 520 859 C 08 1722 1542 4561 57654 T 09 2219 6328 51920 5012 G 10 5344 12006 7720 40409 t |
| Type: | Heterodimer |
| Binding TFs: | Q06546 (Ets-domain, Sterile alpha motif (SAM)/Pointed domain, GA-binding protein alpha chain) Q06546 |
| Binding Sites: | MA0062.4.1 MA0062.4.10 MA0062.4.11 / MA0062.4.4 MA0062.4.12 MA0062.4.13 MA0062.4.14 MA0062.4.15 MA0062.4.16 MA0062.4.17 MA0062.4.18 MA0062.4.19 MA0062.4.2 MA0062.4.20 MA0062.4.3 / MA0062.4.7 MA0062.4.5 MA0062.4.6 MA0062.4.8 MA0062.4.9 |
| Publications: | Batchelor A.H, Piper D.E, de la Brousse F.C, McKnight S.L, Wolberger C. The structure of GABPalpha/beta: an ETS domain- ankyrin repeat heterodimer bound to DNA. Science (New York, N.Y.) 279:1037-41 (1998). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.