DNA Binding Motif

						

			
Accessions: 1akh_A (3D-footprint 20231221)

			
Names: PROTEIN (MATING-TYPE PROTEIN A-1)
Organisms: Saccharomyces cerevisiae
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: MAT A1/ALPHA2/DNA TERNARY COMPLEX
Length: 7
Consensus: TnTnTCA
Weblogo: 
PSSM: P0      A      C      G      T
01      9      9      9     69      T
02     24     24     24     24      n
03      9      9     11     67      T
04     24     24     24     24      n
05      0      0      0     96      T
06      0     96      0      0      C
07     67     11      9      9      A
Binding TFs: 1akh_A (Homeobox domain, Homeobox KN domain)
Binding Sites: 1akh_C
1akh_D
			
Publications: Li T, Jin Y, Vershon A.K, Wolberger C. Crystal structure of the MATa1/MATalpha2 homeodomain heterodimer in complex with DNA containing an A-tract. Nucleic acids research 26:5707-18 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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