DNA Binding Motif

						

			
Accessions: EEAD0032 (EEADannot 2025-01-07)

			
Names: ARF18_DYAD13
Organisms: Zea mays
Libraries: EEADannot 2025-01-07 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 25
Consensus: smGACAwrwwkkwmmwwywTGTCks
Weblogo: 
PSSM: P0      A      C      G      T
01     52    135     81     56      s
02    270    321    179    104      m
03    171     42    622     39      G
04    874      0      0      0      A
05      0    874      0      0      C
06    777     44     39     14      A
07    289    139    200    246      w
08    229    191    266    188      r
09    262    178    215    219      w
10    240    170    199    265      w
11    211    184    225    254      k
12    202    184    239    249      k
13    223    214    214    223      w
14    249    239    184    202      m
15    254    225    184    211      m
16    265    199    170    240      w
17    219    215    178    262      w
18    188    266    191    229      y
19    246    200    139    289      w
20     14     39     44    777      T
21      0      0    874      0      G
22      0      0      0    874      T
23     39    622     42    171      C
24    104    179    321    270      k
25     56     81    135     52      s
Binding TFs: AuxinResponseFactor18 (AUX/IAA family, B3 DNA binding domain, Auxin response factor)
			
Publications: Galli M, Khakhar A, Lu Z, Chen Z, Sen S, Joshi T, Nemhauser JL, Schmitz RJ, Gallavotti A. The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family. Nat Commun 9:4526 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.