DNA Binding Motif

						

			
Accessions: 6mrj_D (3D-footprint 20231221)

			
Names: Nickel-responsive regulator
Organisms: Helicobacter pylori, Helicobacter pylori (strain ATCC 700392 / 26695)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of H.pylori NikR in complex with DNA
Length: 7
Consensus: TTAnTAT
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      7      7      9     73      T
03     73      9      7      7      A
04     24     24     24     24      n
05      9      7      7     73      T
06     96      0      0      0      A
07      9      7      7     73      T
Binding TFs: 6mrj_D (Ribbon-helix-helix protein, copG family, NikR C terminal nickel binding domain)
Binding Sites: 6mrj_L
6mrj_M
			
	
			


			

				

				
				
				
				

			

			

		

	
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