DNA Binding Motif

						

			
Accessions: MA2438.1 (JASPAR 2024)

			
Names: SPL1D
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 14
Consensus: gcrGTAsTACCGCt
Weblogo: 
PSSM: P0      A      C      G      T
01  17520  17517  75586  11402      g
02   8227  75863   7887  30048      c
03  35562   9335  68126   9002      r
04   3604   8888 103420   6113      G
05   2483   3447   1004 115091      T
06 118204    715    591   2515      A
07    305  62788  58601    331      s
08   2378   1323    291 118033      T
09 113850   1584   3517   3074      A
10    390 117053   2243   2339      C
11   3497  99359   2693  16476      C
12  17960   2165  97287   4613      G
13   3149 102268   7688   8920      C
14  10513  13826  15101  82585      t
Binding Sites: MA2438.1.4
MA2438.1.5
MA2438.1.3
MA2438.1.1
MA2438.1.10
MA2438.1.11
MA2438.1.12
MA2438.1.13
MA2438.1.14
MA2438.1.15
MA2438.1.16
MA2438.1.17
MA2438.1.18
MA2438.1.19
MA2438.1.2
MA2438.1.20
MA2438.1.6
MA2438.1.7
MA2438.1.8
MA2438.1.9
			
Publications: Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.