DNA Binding Motif

						

			
Accessions: EEAD0562 (EEADannot 2026-03-04)

			
Names: CBF12C_1
Organisms: Hordeum vulgare
Libraries: EEADannot 2026-03-04 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 16
Consensus: wwryATGTCGGCAvsy
Weblogo: 
PSSM: P0      A      C      G      T
01     10      8      8      9      w
02     19     16     12     29      w
03     28     16     32      0      r
04      4     39      0     33      y
05     72      4      0      0      A
06      6      0      6     64      T
07      3      0     72      1      G
08      0      4      0     72      T
09      1     70      3      2      C
10      0      2     74      0      G
11     12      0     64      0      G
12      0     76      0      0      C
13     68      4      0      4      A
14     33     20     20      3      v
15     14     30     21     11      s
16      6     24     16     30      y
Binding TFs: CBF12C (AP2 domain)
			
Publications: Korinkova N, Techer A, Cudejkova MM, Nguyen DT, Kopecny D, Contreras-Moreira B, Navratilova P, Gantet P, Bergougnoux V. Temporal regulation of gene expression during auxin-triggered crown root formation in barley: an integrated approach. Plant Cell Physiol 66:1284-1303 (2025). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.