DNA Binding Motif

						

			
Accessions: RXRG_methyl_2 (HT-SELEX2 May2017)

			
Names: RXRG
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 14
Consensus: rrGGTCAyGACCyy
Weblogo: 
PSSM: P0      A      C      G      T
01    477    212    501    138      r
02    786     64    542      0      r
03     30     25   1328     45      G
04     33      0   1328    275      G
05      0     11     39   1328      T
06      0   1328     54    111      C
07   1328      0    272      0      A
08      9    793      0    535      y
09     57      6   1328     15      G
10   1328    112     51     39      A
11    194   1328      5      6      C
12     82   1328     43     25      C
13     23    628     25    701      y
14    160    595    180    393      y
Binding TFs: RXRG (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Nuclear/hormone receptor activator site AF-1)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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