DNA Binding Motif

						

			
Accessions: 6psr_L (3D-footprint 20231221)

			
Names: RNA polymerase sigma factor RpoD
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1) with TraR and rpsT P2 promoter
Length: 7
Consensus: TGTCaaT
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0     96      0      G
03      0      0      0     96      T
04      0     96      0      0      C
05     54     13     13     16      a
06     54     13     13     16      a
07      0      0      0     96      T
Binding TFs: 6psr_L (Sigma-70 factor, region 1.2, Sigma-70 factor, region 1.1, Sigma-70 region 3, Sigma-70 region 2 , Sigma-70, region 4, Sigma-70, non-essential region)
Binding Sites: 6psr_O
6psr_P
			
Publications: Chen J, Chiu C, Gopalkrishnan S, Chen AY, Olinares PDB, Saecker RM, Winkelman JT, Maloney MF, Chait BT, Ross W, Gourse RL, Campbell EA, Darst SA. Stepwise Promoter Melting by Bacterial RNA Polymerase. Mol Cell 78:275-288 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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