DNA Binding Motif

						

			
Accessions: HNF1B_full_2 (HumanTF 1.0)

			
Names: HNF1B
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 2
Length: 15
Consensus: arTTAATsATTAACh
Weblogo: 
PSSM: P0      A      C      G      T
01   8805   4400   5808   4797      a
02  10423    667  13387    912      r
03    544   2027   1262  23811      T
04   4263   4321    771  23811      T
05  23811     12    352     42      A
06  23811   1052    255    505      A
07   1699    767     78  23811      T
08   5518   7147   7277   3869      s
09  23811     43    428    728      A
10   1079    248   1198  23811      T
11     57    473      4  23811      T
12  23811    418   1994   2299      A
13  23811   1026   1371    183      A
14   1756  23811    762   1187      C
15   6236   6753   3737   7084      h
Binding TFs: HNF1B_full (Homeobox domain, Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus, Hepatocyte nuclear factor 1 (HNF-1), N terminus)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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