DNA Binding Motif

						

			
Accessions: MA1873.1 (JASPAR 2024)

			
Names: FoxQ
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wwwwwwwGTTTATwwwwwww
Weblogo: 
PSSM: P0      A      C      G      T
01    298    188    212    302      w
02    265    196    216    324      w
03    288    192    216    304      w
04    264    191    215    331      w
05    354    146    204    296      w
06    309    191    173    327      w
07    304    145    161    390      w
08     79     66    804     50      G
09     44     40     29    887      T
10     74     15     51    860      T
11     35     16     34    915      T
12    880     18     61     42      A
13     50     98     42    810      T
14    344    153    218    284      w
15    258    195    169    379      w
16    337    159    180    324      w
17    304    184    205    308      w
18    291    191    212    305      w
19    271    205    218    305      w
20    274    192    231    304      w
Type: Heterodimer
Binding TFs: Q4H3H5 (Fork head domain)
Q4H3H5
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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