DNA Binding Motif
| Accessions: | MA2428.1 (JASPAR 2024) |
| Names: | SPL13B |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 13 |
| Consensus: | GCGGTAsTACCGC |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 13230 10913 68478 3508 G 02 2064 85582 1662 6821 C 03 7280 3589 78772 6488 G 04 2209 1915 88189 3816 G 05 2150 4196 2594 87189 T 06 87861 3300 1870 3098 A 07 544 35920 59156 509 s 08 2477 2050 499 91103 T 09 91268 508 3162 1191 A 10 602 92560 1343 1624 C 11 1660 85098 2847 6524 C 12 5796 1786 86908 1639 G 13 1259 79414 6700 8756 C |
| Binding Sites: | MA2428.1.1 / MA2428.1.13 / MA2428.1.14 / MA2428.1.15 / MA2428.1.16 / MA2428.1.2 MA2428.1.10 MA2428.1.11 / MA2428.1.5 MA2428.1.12 / MA2428.1.6 MA2428.1.17 MA2428.1.18 MA2428.1.19 MA2428.1.20 MA2428.1.3 MA2428.1.4 MA2428.1.7 MA2428.1.8 MA2428.1.9 |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.