DNA Binding Motif

						

			
Accessions: RXRA_MOUSE.H10MO.C|M01331 (HOCOMOCO 10)

			
Names: Rxra
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: RXR-related receptors (NR2){2.1.3}; Retinoid X receptors (NR2B){2.1.3.1}
Length: 22
Consensus: rrgrtcarrAGkTCAAGGtCAk
Weblogo: 
PSSM: P0      A      C      G      T
01    213     42    174     70      r
02    139     18    264     78      r
03    105     50    289     55      g
04    171     66    170     92      r
05     44     92    120    243      t
06     91    235     64    109      c
07    232    113     90     64      a
08    170     70    171     88      r
09    183     36    248     32      r
10    387      6     90     16      A
11     39      8    438     14      G
12     23     23    155    298      k
13     13     28     18    440      T
14     19    424     27     29      C
15    461     25      5      8      A
16    419      7     64      9      A
17     45     20    427      7      G
18     25     29    423     22      G
19     49    120     57    273      t
20     41    349     59     50      C
21    370     33     48     48      A
22     68     75    219    137      k
Binding TFs: RXRA_MOUSE (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Nuclear/hormone receptor activator site AF-1)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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