DNA Binding Motif

						

			
Accessions: UN0389.1 (JASPAR 2024)

			
Names: AT1G66420
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 19
Consensus: AacmTTATCCATwwmttak
Weblogo: 
PSSM: P0      A      C      G      T
01    736 37.736 75.472    151      A
02    566 75.472    208    151      a
03    189    660 56.604  94.34      c
04    321    528    151      0      m
05      0 18.868      0    981      T
06    113    189      0    698      T
07    981      0      0 18.868      A
08      0      0      0   1000      T
09      0    981      0 18.868      C
10 18.868    981      0      0      C
11    774      0    132  94.34      A
12    132    132 37.736    698      T
13    528 37.736      0    434      w
14    340 18.868 56.604    585      w
15    283    434 75.472    208      m
16 75.472    226    113    585      t
17    208 56.604    170    566      t
18 452.83    170    245    132      a
19    208  94.34    340    358      k
Type: Heterodimer
Binding TFs: Q9C517 (Protein of unknown function, DUF573)
Q9C517
			
	
			


			

				

				
				
				
				

			

			

		

	
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