DNA Binding Motif

						

			
Accessions: PAX1_2 (HT-SELEX2 May2017)

			
Names: PAX1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 17
Consensus: csGTCACGCwYsAcTGm
Weblogo: 
PSSM: P0      A      C      G      T
01    214    702    222    366      c
02     66   1019    486     75      s
03      5     18   1505     59      G
04    104    162     13   1505      T
05     13   1505     16    187      C
06   1505     17     44      3      A
07     22   1505     11    160      C
08     27      0   1505      0      G
09     16   1505    469     12      C
10    720    148     66    785      w
11     56    580      7   1505      Y
12     15    604    901     34      s
13   1505     50    425     24      A
14    261    669    336    239      c
15     42    388     30   1116      T
16    177     26   1505    341      G
17    482    702    321      0      m
Binding TFs: PAX1 ('Paired box' domain, Homeodomain-like domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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