DNA Binding Motif

						

			
Accessions: UN0479.1 (JASPAR 2024)

			
Names: ZF-C2H2-35
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 22
Consensus: awgcAAcCTCGgTtCCAwarav
Weblogo: 
PSSM: P0      A      C      G      T
01    284    248    242    226      a
02    267    225    204    304      w
03    195    243    350    213      g
04    180    464    184    172      c
05    786     64     64     86      A
06    756     83     62     99      A
07     91    676     70    162      c
08      9    977      6      8      C
09      7      7     11    975      T
10     83    846     54     17      C
11    121     25    734    120      G
12    231     95    525    150      g
13     36     94     88    782      T
14    218    178     46    558      t
15      9    956     18     17      C
16    107    822     33     37      C
17    922     14     35     30      A
18    272    189    211    328      w
19    568     87    141    204      a
20    457    154    267    122      r
21    334    235    208    223      a
22    289    261    253    198      v
Type: Heterodimer
Binding TFs: Q4H2H4 (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Q4H2H4
			
	
			


			

				

				
				
				
				

			

			

		

	
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