DNA Binding Motif

						

			
Accessions: HOXA1_methyl_2 (HT-SELEX2 May2017)

			
Names: HOXA1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 8
Consensus: vTCrTTAa
Weblogo: 
PSSM: P0      A      C      G      T
01   2869   1857   2383     78      v
02    276    300    481   5252      T
03    415   5252    120    306      C
04   7821     60   5252      0      r
05    147    384     54   5252      T
06    657    514    178   5252      T
07   5252    125    398    309      A
08   2311    754   1194    994      a
Binding TFs: HOXA1 (Homeobox domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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