DNA Binding Motif

						

			
Accessions: RAV1(1) (Athamap 20091028), MA0582.1 (JASPAR 2024)

			
Names: RAV1(1), RAV1
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1, JASPAR 2024 2
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009).  [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 12
Consensus: mwgCAACAkwwa
Weblogo: 
PSSM: P0      A      C      G      T
01     14     17     12      6      m
02     16     11     10     14      w
03      7     14     35      1      g
04      0     62      0      0      C
05     47     12      9      0      A
06     62      4      3      0      A
07      0     69      0      0      C
08     69      0      0      0      A
09      9      7     32     21      k
10     41      4      4     20      w
11     34      6     10     19      w
12     27      9     17     16      a
Type: Heterodimer
Binding TFs: Q9ZWM9 / RAV1 (AP2 domain, B3 DNA binding domain)
Q9ZWM9
Binding Sites: MA0582.1.1
MA0582.1.10
MA0582.1.11
MA0582.1.12
MA0582.1.13
MA0582.1.14
MA0582.1.15
MA0582.1.16
MA0582.1.17
MA0582.1.18
MA0582.1.19
MA0582.1.2
MA0582.1.20
MA0582.1.3
MA0582.1.4
MA0582.1.5
MA0582.1.6
MA0582.1.7
MA0582.1.8
MA0582.1.9
			
Publications: Kagaya Y., Ohmiya K., Hattori T. RAV1, a Novel DNA-Binding Protein, Binds to Bipartite Recognition Sequence through Two Distinct DNA-Binding Domains Uniquely Found in Higher Plants. Nucleic Acids Res. 27:470-478 (1999). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.