DNA Binding Motif

						

			
Accessions: MA1991.2 (JASPAR 2024)

			
Names: Hnf1A
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 10
Consensus: cCTTTGATst
Weblogo: 
PSSM: P0      A      C      G      T
01    103    744    204    198      c
02     18   1130     39     62      C
03     19     30      7   1193      T
04     16     51     60   1122      T
05     16     11     12   1210      T
06     30    118   1033     68      G
07   1125     35     16     73      A
08    105     21     31   1092      T
09     85    689    377     98      s
10    156    210     99    784      t
Type: Heterodimer
Binding TFs: P22361 (Homeobox domain, Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus, Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus, Hepatocyte nuclear factor 1 (HNF-1), N terminus)
P22361
Binding Sites: MA1991.2.1
MA1991.2.10
MA1991.2.11
MA1991.2.12
MA1991.2.13
MA1991.2.14
MA1991.2.15 / MA1991.2.19
MA1991.2.16 / MA1991.2.7
MA1991.2.17
MA1991.2.18
MA1991.2.2
MA1991.2.20
MA1991.2.3
MA1991.2.4
MA1991.2.5
MA1991.2.6
MA1991.2.8
MA1991.2.9
			
Publications: Emmanuel AO, Arnovitz S, Haghi L, Mathur PS, Mondal S, Quandt J, Okoreeh MK, Maienschein-Cline M, Khazaie K, Dose M, Gounari F. TCF-1 and HEB cooperate to establish the epigenetic and transcription profiles of CD4(+)CD8(+) thymocytes. Nat Immunol 19:1366-1378 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.