DNA Binding Motif

						

			
Accessions: 1trr_JK (3D-footprint 20231221)

			
Names: PROTEIN (TRP REPRESSOR)
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX
Length: 14
Consensus: AncGnnnnnGnACG
Weblogo: 
PSSM: P0      A      C      G      T
01     69     19      4      4      A
02     24     24     24     24      n
03      8     56     15     17      c
04      6      4     82      4      G
05     24     24     24     24      n
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10      6      4     82      4      G
11     24     24     24     24      n
12     82      6      4      4      A
13      0     96      0      0      C
14      0      0     96      0      G
Binding TFs: 1trr_J / 1trr_K (Trp repressor protein)
Binding Sites: 1trr_F / 1trr_L
			
Publications: Lawson C.L, Carey J. Tandem binding in crystals of a trp repressor/operator half-site complex. Nature 366:178-82 (1993). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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