DNA Binding Motif
| Accessions: | UP00232A_1 (UniPROBE 20160601) |
| Names: | Dobox4, Not Available |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | wwawTAGATACCCywTw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.26 0.21 0.17 0.35 w 02 0.41 0.12 0.12 0.35 w 03 0.49 0.19 0.15 0.17 a 04 0.50 0.06 0.13 0.31 w 05 0.08 0.02 0.17 0.73 T 06 0.86 0 0.05 0.10 A 07 0.05 0 0.83 0.12 G 08 0.99 0.01 0 0 A 09 0.01 0.10 0.01 0.88 T 10 0.76 0.23 0 0 A 11 0 0.95 0.01 0.04 C 12 0.01 0.97 0 0.02 C 13 0.08 0.76 0.01 0.16 C 14 0.10 0.47 0.09 0.34 y 15 0.39 0.08 0.15 0.38 w 16 0.06 0.08 0.15 0.72 T 17 0.37 0.11 0.22 0.30 w |
| Binding TFs: | UP00232A (Homeobox domain) |
| Binding Sites: | AAGATACC AGACACCC AGATACCA AGATACCT AGATCCCC AGGGATCA AGGGTATC ATATACCC ATGATCCC GAGATACC GAGATCCC GATACCCC GATCCCCC GGCTCTAA GGGCTCTA GGGTATCA GGTATCTA GGTATTTA GGTGTCTA AGATCCCT |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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