DNA Binding Motif

						

			
Accessions: ERR1_MOUSE.H10MO.A|M01075 (HOCOMOCO 10)

			
Names: Esrra
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: Steroid hormone receptors (NR3){2.1.1}; ER-like receptors (NR3A&B){2.1.1.2}
Length: 9
Consensus: ycAAGGTCA
Weblogo: 
PSSM: P0      A      C      G      T
01    268    692    205    883      y
02    449   1180    350     69      c
03   1569     72    296    111      A
04   1923     28     63     34      A
05     40      6   1955     47      G
06     15     13   1997     23      G
07    189     83    230   1546      T
08     28   1800    138     82      C
09   1906     21     78     43      A
Binding TFs: ERR1_MOUSE (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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