DNA Binding Motif
| Accessions: | MA1721.2 (JASPAR 2024) |
| Names: | ZNF93 |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 14 |
| Consensus: | gGyrkCrGCAGCGG |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 467 279 1499 143 g 02 175 233 1857 123 G 03 117 1120 211 940 y 04 1455 177 663 93 r 05 61 114 1483 730 k 06 38 2278 22 50 C 07 1001 92 1263 32 r 08 18 26 2334 10 G 09 23 2279 42 44 C 10 1659 96 576 57 A 11 30 20 2328 10 G 12 19 2292 33 44 C 13 340 138 1784 126 G 14 72 134 2145 37 G |
| Type: | Heterodimer |
| Binding TFs: | P35789 (Zinc finger, C2H2 type, KRAB box, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) P35789 |
| Binding Sites: | MA1721.2.1 / MA1721.2.10 / MA1721.2.11 / MA1721.2.12 / MA1721.2.18 / MA1721.2.19 / MA1721.2.2 / MA1721.2.20 / MA1721.2.3 / MA1721.2.4 / MA1721.2.5 / MA1721.2.6 / MA1721.2.7 / MA1721.2.8 / MA1721.2.9 MA1721.2.13 MA1721.2.14 MA1721.2.15 MA1721.2.16 MA1721.2.17 |
| Publications: | Jacobs FM, Greenberg D, Nguyen N, Haeussler M, Ewing AD, Katzman S, Paten B, Salama SR, Haussler D. An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons. Nature 516:242-5 (2014). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.