DNA Binding Motif

Accessions: UP00466A_3 (UniPROBE 20160601)
Names: Sin Three Binding protein, Stb5
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 9
Consensus: wTAGTrCCG
Weblogo:
PSSM: P0 A C G T
01 0.54 0.07 0.10 0.29 w
02 0.14 0.01 0.01 0.84 T
03 0.87 0.05 0.04 0.04 A
04 0.01 0.05 0.86 0.07 G
05 0.11 0.01 0.09 0.79 T
06 0.26 0.06 0.49 0.19 r
07 0.01 0.97 0.02 0.01 C
08 0.01 0.97 0.02 0.01 C
09 0.01 0.01 0.95 0.02 G
Binding TFs: UP00466A (Fungal Zn(2)-Cys(6) binuclear cluster domain, Fungal specific transcription factor domain )
Binding Sites: AACCCCGC
CGGACATA
CGGACTTA
CGGAGATA
CGGAGTTA
CGGGGATA
AAACACCG
AAACCCCG
AACACCGA
AACACCGC
AGCACCGA
CGGCACTA
CGGCATTA
CGGCCTTA
CGGCGTTA
CGGGGTTA
CGGTCTTA
CGGTGATA
CGGTGCTA
CGGTGTTA
Publications: Gordân R, Murphy KF, McCord RP, Zhu C, Vedenko A, Bulyk ML. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol : (2011). [Pubmed]

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