DNA Binding Motif

						

			
Accessions: MA1868.1 (JASPAR 2024)

			
Names: FoxI-c
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: rhskaskATGTTTtkwbkkr
Weblogo: 
PSSM: P0      A      C      G      T
01    321    189    264    226      r
02    271    271    203    254      h
03    222    302    349    127      s
04    194    164    299    343      k
05    324    197    239    239      a
06    135    257    419    189      s
07    213    213    320    253      k
08    829     49     73     49      A
09     24     49     61    866      T
10     37     24    890     49      G
11     24     73     24    878      T
12     49     49     49    854      T
13    110     37     49    805      T
14    213    200    227    360      t
15    212    167    288    333      k
16    259    172    241    328      w
17    148    259    278    315      b
18    200    200    320    280      k
19    220    122    268    390      k
20    273    242    394     91      r
Type: Heterodimer
Binding TFs: Q4H3I4 (Fork head domain)
Q4H3I4
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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