DNA Binding Motif

						

			
Accessions: 1fjl_B (3D-footprint 20231221)

			
Names: PAIRED PROTEIN
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: HOMEODOMAIN FROM THE DROSOPHILA PAIRED PROTEIN BOUND TO A DNA OLIGONUCLEOTIDE
Length: 7
Consensus: GTAATcA
Weblogo: 
PSSM: P0      A      C      G      T
01      2     10     74     10      G
02      0      0      0     96      T
03     96      0      0      0      A
04     96      0      0      0      A
05      0      0      0     96      T
06     10     64     10     12      c
07     66     10     10     10      A
Binding TFs: 1fjl_B (Homeobox domain, Homeobox KN domain)
Binding Sites: 1fjl_D
1fjl_E
			
Publications: Wilson D.S, Guenther B, Desplan C, Kuriyan J. High resolution crystal structure of a paired (Pax) class cooperative homeodomain dimer on DNA. Cell 82:709-19 (1995). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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