DNA Binding Motif

						

			
Accessions: 6ueo_G (3D-footprint 20231221)

			
Names: TATA-box-binding protein 1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of A. thaliana TBP-AC mismatch DNA site
Length: 8
Consensus: TATAAAAG
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     96      0      0      0      A
03      0      0      0     96      T
04     96      0      0      0      A
05     96      0      0      0      A
06     67     11      9      9      A
07     67      9     11      9      A
08     11      9     67      9      G
Binding TFs: 6ueo_G (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 6ueo_H
6ueo_I
			
Publications: Afek A, Shi H, Rangadurai A, Sahay H, Senitzki A, Xhani S, Fang M, Salinas R, Mielko Z, Pufall MA, Poon GMK, Haran TE, Schumacher MA, Al-Hashimi HM, Gordân R. DNA mismatches reveal conformational penalties in protein-DNA recognition. Nature 587:291-296 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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