DNA Binding Motif

						

			
Accessions: M0719 (AthalianaCistrome v4_May2016)

			
Names: AT1G24250.DAP, T04168;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 18
Consensus: tyyyAACtaCCAMCyAmh
Weblogo: 
PSSM: P0      A      C      G      T
01     96     97     65    209      t
02     98    173     35    161      y
03     82    189     46    150      y
04     30    308     10    119      y
05    461      2      0      4      A
06    350     82     10     25      A
07      0    451      0     16      C
08     78    100      9    280      t
09    295     70     44     58      a
10     65    343     27     32      C
11     32    325      0    110      C
12    438      3      3     23      A
13    339    118      0     10      M
14      9    451      6      1      C
15    103    173     17    174      y
16    338     26     82     21      A
17    163    212     14     78      m
18    133    176      5    153      h
Binding TFs: T04168 (Paired amphipathic helix repeat)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.