DNA Binding Motif
| Accessions: | MA0114.5 (JASPAR 2024) |
| Names: | HNF4A |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 9 |
| Consensus: | CAAAGTCCA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1468 41443 1237 2356 C 02 43321 1257 1061 865 A 03 40217 1370 3615 1302 A 04 43264 544 1897 799 A 05 716 916 43528 1344 G 06 927 695 2184 42698 T 07 2770 37804 1826 4104 C 08 1363 42341 643 2157 C 09 36654 2782 2936 4132 A |
| Type: | Heterodimer |
| Binding TFs: | P41235 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains)) P41235 |
| Binding Sites: | MA0114.5.1 MA0114.5.10 MA0114.5.11 / MA0114.5.8 MA0114.5.12 / MA0114.5.2 MA0114.5.13 MA0114.5.14 / MA0114.5.17 MA0114.5.15 MA0114.5.16 / MA0114.5.18 MA0114.5.19 / MA0114.5.3 MA0114.5.20 MA0114.5.4 MA0114.5.5 MA0114.5.6 MA0114.5.7 MA0114.5.9 |
| Publications: | Fang B, Mane-Padros D, Bolotin E, Jiang T, Sladek F.M. Identification of a binding motif specific to HNF4 by comparative analysis of multiple nuclear receptors. Nucleic acids research 40:5343-56 (2012). [Pubmed] |
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