DNA Binding Motif

						

			
Accessions: USF1_2 (HT-SELEX2 May2017)

			
Names: USF1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 11
Consensus: cmCACGTGaCm
Weblogo: 
PSSM: P0      A      C      G      T
01   8792  14236   7428   8612      c
02   5982   9705   5571   1770      m
03      0  23028      0      0      C
04  23028      0      0      0      A
05      0  23028      0      0      C
06      0      0  23028      0      G
07      0      0      0  23028      T
08      0      0  23028      0      G
09  23028   6603   7043   3506      a
10    967  19199    890   3828      C
11   5825   7997   5336   3870      m
Binding TFs: USF1 (Helix-loop-helix DNA-binding domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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