DNA Binding Motif
| Accessions: | UP00035A_1 (UniPROBE 20160601) |
| Names: | AA408311, Hic-1, Hic1, hypermethylated in cancer 1, Hypermethylated in cancer 1 protein |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | dykrTGCCAaCCtrcy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.28 0.21 0.25 0.26 d 02 0.14 0.33 0.22 0.32 y 03 0.15 0.24 0.27 0.34 k 04 0.66 0.01 0.32 0.02 r 05 0 0 0 0.99 T 06 0.04 0 0.96 0 G 07 0 0.97 0.02 0 C 08 0 0.99 0 0 C 09 0.92 0.07 0 0.01 A 10 0.58 0.21 0.12 0.09 a 11 0.01 0.93 0.03 0.04 C 12 0.03 0.80 0.05 0.12 C 13 0.20 0.19 0.17 0.44 t 14 0.40 0.15 0.29 0.15 r 15 0.20 0.41 0.15 0.24 c 16 0.24 0.33 0.14 0.28 y |
| Binding TFs: | UP00035A (Zinc finger, C2H2 type, C2H2 type zinc-finger (2 copies), Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) |
| Binding Sites: | AGGTGGCA AGTTGGCA ATGCCAAC ATGCCACC ATGCCAGC ATGCCCAC ATGCCCAT ATTGGCAC CGTTGGCA GATGCCCA GGGTGGCA GGTGCCCA GGTGGCAC GGTGGGCA GGTTGGCA GTGCCCAC TGCCCACA TGGGCACA TGTGCCAA GGTGCCAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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