DNA Binding Motif

						

			
Accessions: SOX21_DBD_2 (HumanTF 1.0)

			
Names: SOX21
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4; Possible binding to single stranded DNA
Length: 16
Consensus: AACAATrkgyAKTGTT
Weblogo: 
PSSM: P0      A      C      G      T
01    888      2     10     19      A
02    888     13    147     23      A
03      4    888      5      1      C
04    888      0      1      1      A
05    888      0      1      0      A
06      0      1      0    888      T
07    279     41    441    128      r
08    106     27    342    413      k
09    178     84    411    216      g
10     46    465     23    353      y
11    888      1      4      0      A
12      0      3    616    272      K
13      4      1      0    888      T
14      0      2    888      0      G
15      6      3     10    888      T
16     24     70     37    888      T
Binding TFs: SOX21_DBD (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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