DNA Binding Motif

						

			
Accessions: MA0781.2 (JASPAR 2024)

			
Names: PAX9
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: HT-SELEX
Length: 16
Consensus: sGTCACGCwTSAsTGm
Weblogo: 
PSSM: P0      A      C      G      T
01    154   2410   1176    244      s
02      0      0   3811     10      G
03     67     13      6   3107      T
04      0   3775      0    171      C
05   3241     71      2      1      A
06      0   3860      0    267      C
07      0      0   3945      0      G
08      0   3695    727      0      C
09   1840     83     13   1141      w
10      1     68      0   3188      T
11      3   1412   3552      3      S
12   3083      0    468      0      A
13    622   1423    962    444      s
14      6    207      0   3132      T
15    142      8   3608    251      G
16   1249   2390    471      0      m
Type: Heterodimer
Binding TFs: P55771 ('Paired box' domain, Homeodomain-like domain)
P55771
			
Publications: Wolf LV, Yang Y, Wang J, Xie Q, Braunger B, Tamm ER, Zavadil J, Cvekl A. Identification of pax6-dependent gene regulatory networks in the mouse lens. PLoS One : (2009;4(1):e4159.). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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