DNA Binding Motif

						

			
Accessions: M0268 (AthalianaCistrome v4_May2016)

			
Names: CDF3.DAP, T14218;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 19
Consensus: aaaaargAAAAAGtraaaa
Weblogo: 
PSSM: P0      A      C      G      T
01    353     53     71    123      a
02    339     27    117    117      a
03    333     47    113    107      a
04    301     36    149    114      a
05    272     73    137    118      a
06    195     93    178    134      r
07    142    144    175    139      g
08    455     31     79     35      A
09    512      0      3     85      A
10    600      0      0      0      A
11    600      0      0      0      A
12    584      0     16      0      A
13      0      0    600      0      G
14     29     56    131    384      t
15    165     20    328     87      r
16    317    141     27    115      a
17    392     86     36     86      a
18    338     64     49    149      a
19    360     69     88     83      a
Binding TFs: T14218 (Dof domain, zinc finger)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.