DNA Binding Motif

						

			
Accessions: 4jqd_AB (3D-footprint 20231221)

			
Names: Csp231I C protein
Organisms: Citrobacter sp. RFL231
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OL operator complex
Length: 15
Consensus: CTAAGtnnncCTTAG
Weblogo: 
PSSM: P0      A      C      G      T
01      0     89      0      7      C
02      9      6      4     77      T
03     96      0      0      0      A
04     96      0      0      0      A
05      3      7     74     12      G
06     11     12     12     61      t
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     12     61     12     11      c
11      9     69      9      9      C
12      0      0      0     96      T
13      0      0      0     96      T
14     90      3      3      0      A
15      0      0     96      0      G
Binding TFs: 4jqd_A / 4jqd_B (Helix-turn-helix, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: 4jqd_G
4jqd_H
			
Publications: Shevtsov M.B, Streeter S.D, Thresh S.J, Swiderska A, McGeehan J.E, Kneale G.G. Structural analysis of DNA binding by C.Csp231I, a member of a novel class of R-M controller proteins regulating gene expression. Acta crystallographica. Section D, Biological crystallography 71:398-407 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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