DNA Binding Motif

						

			
Accessions: 7ce1_ST (3D-footprint 20231221)

			
Names: LacI-type transcription factor
Organisms: Agrobacterium tumefaciens A6
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Complex STRUCTURE OF TRANSCRIPTION FACTOR SghR with its COGNATE DNA
Length: 11
Consensus: TGCAnCGtTgC
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0     96      0      G
03      0     96      0      0      C
04     96      0      0      0      A
05     24     24     24     24      n
06      0     96      0      0      C
07      0      0     96      0      G
08     13     13     16     54      t
09      0      0      0     96      T
10     13     13     54     16      g
11      0     96      0      0      C
Type: Heterodimer
Binding TFs: 7ce1_S (Bacterial regulatory proteins, lacI family)
7ce1_T (Bacterial regulatory proteins, lacI family, Periplasmic binding proteins and sugar binding domain of LacI family)
Binding Sites: 7ce1_s
7ce1_t
			
Publications: Ye F, Wang C, Fu Q, Yan XF, Bharath SR, Casanas A, Wang M, Song H, Zhang LH, Gao YG. Structural basis of a novel repressor, SghR, controlling Agrobacterium infection by cross-talking to plants. J Biol Chem 295:12290-12304 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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