DNA Binding Motif
| Accessions: | 4iwr_AB (3D-footprint 20231221) |
| Names: | Regulatory protein |
| Organisms: | Enterobacter sp. RFL1396 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | C.Esp1396I bound to a 25 base pair operator site |
| Length: | 16 |
| Consensus: | TGTGACnnnnnnTCcG |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0 0 0 96 T 02 0 0 96 0 G 03 0 5 11 80 T 04 5 0 91 0 G 05 90 0 5 1 A 06 0 96 0 0 C 07 24 24 24 24 n 08 24 24 24 24 n 09 24 24 24 24 n 10 24 24 24 24 n 11 24 24 24 24 n 12 24 24 24 24 n 13 13 11 5 67 T 14 0 96 0 0 C 15 18 56 11 11 c 16 0 0 80 16 G |
| Type: | Heterodimer |
| Binding TFs: | 4iwr_B (Helix-turn-helix, Helix-turn-helix domain) 4iwr_A (Helix-turn-helix, Helix-turn-helix domain) |
| Binding Sites: | 4iwr_C 4iwr_D |
| Publications: | Martin RN, McGeehan JE, Ball NJ, Streeter SD, Thresh SJ, Kneale GG. Structural analysis of DNA-protein complexes regulating the restriction-modification system Esp1396I. Acta Crystallogr Sect F Struct Biol Cryst Commun : (2013). [Pubmed] |
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