DNA Binding Motif
| Accessions: | UP00239A_1 (UniPROBE 20160601) |
| Names: | Not Available, Obox2, oocyte specific homeobox 2 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | wkrgGGGGATTAAmwat |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.29 0.13 0.14 0.44 w 02 0.12 0.14 0.41 0.32 k 03 0.45 0.15 0.31 0.09 r 04 0.15 0.06 0.65 0.14 g 05 0.19 0.04 0.73 0.05 G 06 0.07 0.02 0.86 0.04 G 07 0.06 0.01 0.92 0.01 G 08 0.02 0 0.95 0.03 G 09 0.97 0.02 0 0.01 A 10 0.01 0 0.01 0.98 T 11 0.02 0.01 0 0.97 T 12 0.93 0 0.01 0.05 A 13 0.69 0.02 0.08 0.21 A 14 0.29 0.52 0.06 0.12 m 15 0.26 0.06 0.15 0.52 w 16 0.51 0.23 0.09 0.16 a 17 0.22 0.24 0.08 0.46 t |
| Binding TFs: | UP00239A (Homeobox domain) |
| Binding Sites: | AATAATCC AGATTAAA AGGATTAA AGGATTAT AGGGATTA ATAATCCA ATAATCCC ATTAATCC ATTTAATC CGGGATTA CTAATCCC CTTAATCC GATAATCC GATTAAAA GCTAATCC GGATTAAA GGATTAAC GGATTATA GGGATTAA TGGATTAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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