DNA Binding Motif

						

			
Accessions: UN0455.1 (JASPAR 2024)

			
Names: Meis
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: rrmarrtTGACAgsykkcmm
Weblogo: 
PSSM: P0      A      C      G      T
01    250    233    268    248      r
02    265    249    252    234      r
03    283    252    237    227      m
04    291    235    247    226      a
05    300    213    265    221      r
06    253    245    255    248      r
07    249    238    230    283      t
08     46     39     34    880      T
09     13     16    962     10      G
10    808     25     50    118      A
11     16    949     10     25      C
12    912     11     47     29      A
13    107    115    662    115      g
14    201    288    305    206      s
15    189    257    189    365      y
16    234    232    260    273      k
17    223    234    273    269      k
18    242    271    240    247      c
19    257    274    224    245      m
20    260    263    234    242      m
Type: Heterodimer
Binding TFs: Q4H374 (Homeobox domain, Homeobox KN domain)
Q4H374
			
	
			


			

				

				
				
				
				

			

			

		

	
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