DNA Binding Motif

						

			
Accessions: MA1867.1 (JASPAR 2024)

			
Names: FoxI-b
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wtkttwwTGTTTAywwwaha
Weblogo: 
PSSM: P0      A      C      G      T
01    276    196    219    309      w
02    219    211    195    375      t
03    230    178    253    339      k
04    184    157    188    472      t
05    247    192    232    329      t
06    312    133    166    389      w
07    292    103    133    472      w
08      9      6      4    981      T
09    227      3    761      8      G
10      6      6      3    985      T
11     56      3     67    874      T
12      4      3     55    939      T
13    821      8     69    102      A
14     74    479    151    295      y
15    422     68    117    394      w
16    327    217    127    329      w
17    626     45     54    275      w
18    591    122     62    225      a
19    253    405     75    266      h
20    641    111     79    170      a
Type: Heterodimer
Binding TFs: Q4H3I5 (Fork head domain)
Q4H3I5
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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